BtaEX6046990 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003530 | DDX31
Description
Bos taurus DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 (DDX31), mRNA. [Source:RefSeq mRNA;Acc:NM_001101886]
Coordinates
chr11:102750132-102752755:-
Coord C1 exon
chr11:102752649-102752755
Coord A exon
chr11:102751038-102751273
Coord C2 exon
chr11:102750132-102750308
Length
236 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTCGCTTTCTCAAAGGTG
3' ss Score
8.13
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AATCTTGGATTTGGGTTTTGAAAAGGACCTCACGGTGATCCTCAACGCTGTGAATGCCGAGTGCCAGGAACGACAGAACGTCTTGCTGTCGGCGACGCTCACGGAAG
Seq A exon
GTGTAGCACGGCTAGCTGACATCAGCTTACACGACCCTGTCAGCATCTCTGTCCTGGATGAAAGCCATGACGTGTCGAGCCCGGAGAGCGAAGCCTTTCTCGAAGCTTCTCCTCCACAGGCGACTGATGAGCTGGACGGCTTCGCCATCCCAGCCGGTCTCGAGCAGCACGTGGTGGTGGTCCCCAGCAAGCTGAGACTCGTCTGCCTGGCGGCCTTTATCCTGCAGAAGTGCAAG
Seq C2 exon
TTTGAGAGAGACCAGAAGGTGATCGTCTTCTTCTCAAGTTGCGAGCTGGTGGAGTTCCACTACACCCTCTTCCTCCAGACCCTGCTGAGTGGCTCAGGGGCCCTGGCCCCAGAGCATTTGCCATCCACCTCCACGCCGTTAAAATTCCTGCGGCTGCACAGCGCCCTGGAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003530-'17-17,'17-15,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(20.2=100)
A:
PF0027024=DEAD=PD(2.2=5.1)
C2:
PF0027126=Helicase_C=PU(21.3=27.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTTGGATTTGGGTTTTGAAAAGG
R:
CTCTTGCTCCAGGGCGCT
Band lengths:
284-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]