GgaEX1019118 @ galGal3
Exon Skipping
Gene
ENSGALG00000003534 | F1NM06_CHICK
Description
NA
Coordinates
chr17:7264423-7265871:-
Coord C1 exon
chr17:7265765-7265871
Coord A exon
chr17:7264895-7265130
Coord C2 exon
chr17:7264423-7264599
Length
236 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTCCTGTGGTTTAGGAG
3' ss Score
8.01
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATCCTAGACCTGGGCTTTGAGAAGGATGTAACTGTGATACTTAATGCTTTAAATGCTGAGAGGGAGACGCGTCAGAATGTTCTGCTCTCAGCCACACTCACTGAAG
Seq A exon
GAGTAACACGGCTGGCTGATATCAGTTTGAATGATCCCATCAGAATTTCCATAGCAGATGAAATCCGGGAGAGTCTCAAACCAGCATTACAAACAGAAAAAGAAGCCAATAGTTCCTCAAACCGTATGGACCAGGAAAACTTTGCTGTTCCAGAGAAGCTTAAGCAGTATTTCATGATGGTCCCCAGCAAATTGAGGCTTGTCACATTAGCAGCTTTTGTCCTAGAGAAATGCAAG
Seq C2 exon
TATGAAAAGCAACATAAGATGATCATCTTTTTCTCCAGTTGTGAACAAGTGGAATTCCACTACGAGCTCCTTGTTAATGTCCTTTCAGGAGAGCTAGAGTCTGAACAACCTAAACGTTCGTCTGTCTCCTCTGTGCAATTACAGTTTCTACGACTGCATGGGAACATGGAACAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003534-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.215 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(20.2=100)
A:
PF0027024=DEAD=PD(2.2=5.1)
C2:
PF0027126=Helicase_C=PU(21.3=27.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTAGACCTGGGCTTTGAG
R:
TTCCTGTTCCATGTTCCCATGC
Band lengths:
284-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]