HsaEX6063661 @ hg19
Exon Skipping
Gene
ENSG00000125485 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:16715]
Coordinates
chr9:135526462-135534122:-
Coord C1 exon
chr9:135534058-135534122
Coord A exon
chr9:135527835-135527879
Coord C2 exon
chr9:135526462-135526503
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTGTGTGTCAACAGCGC
3' ss Score
10.59
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTAAAACTCTTGCCTATTGCATCCCTGTGGTCCAGTCCCTTCAAGCAATGGAGTCAAAAATACAG
Seq A exon
CGCAGTGATGGCCCCTATGCCCTGGTGCTCGTGCCAACGAGAGAG
Seq C2 exon
CTAGCTCTACAAAGCTTTGACACTGTCCAGAAACTGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-'10-10,'10-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(11.8=100)
A:
PF0027024=DEAD=FE(7.9=100)
C2:
PF0027024=DEAD=FE(7.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTATTGCATCCCTGTGGTC
R:
AGCAGTTTCTGGACAGTGTCA
Band lengths:
92-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)