GgaEX1019524 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25811105-25812698:-
Coord C1 exon
chr5:25812508-25812698
Coord A exon
chr5:25811946-25811977
Coord C2 exon
chr5:25811105-25811145
Length
32 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTCTTCTCTTCCAGTGC
3' ss Score
11.81
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGCACCTCAACTATGTGACAGAGATCTCTCAGGATGAGCTCTATGTACTGGACCCAGAGCTGGTGATCACCCAGACCGTAGGCACATCTCCTGCCATGCCTGATCTTGTTGACTCATCTGCCACACCTCCTGGGCACCACTTTGCTTTCCCATCCTCTTCTTCCTCTCCACCCTGCTCTCCTGCCCCCAG
Seq A exon
TGCTGACGCTGAGCTCTGCCTCCCGCACAAAG
Seq C2 exon
ATGACCTGATAGAAGCTGCCAAGACTGGTAACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'29-29,'29-28,31-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.547 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(13.7=83.3)
C2:
PF127962=Ank_2=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCATGCCTGATCTTGTT
R:
CTTGGCAGCTTCTATCAGGTCA
Band lengths:
124-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]