GgaEX1019524 @ galGal4
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22955682-22957275:-
Coord C1 exon
chr5:22957085-22957275
Coord A exon
chr5:22956523-22956554
Coord C2 exon
chr5:22955682-22955722
Length
32 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTTCTTCTCTTCCAGTGC
3' ss Score
11.81
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAGCACCTCAACTATGTGACAGAGATCTCTCAGGATGAGCTCTATGTACTGGACCCAGAGCTGGTGATCACCCAGACCGTAGGCACATCTCCTGCCATGCCTGATCTTGTTGACTCATCTGCCACACCTCCTGGGCACCACTTTGCTTTCCCATCCTCTTCTTCCTCTCCACCCTGCTCTCCTGCCCCCAG
Seq A exon
TGCTGACGCTGAGCTCTGCCTCCCGCACAAAG
Seq C2 exon
ATGACCTGATAGAAGCTGCCAAGACTGGTAACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'42-47,'42-46,45-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.547 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(14.3=83.3)
C2:
PF127962=Ank_2=FE(18.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCATGCCTGATCTTGTT
R:
CTTGGCAGCTTCTATCAGGTCA
Band lengths:
124-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]