RnoEX6013175 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64389860-64431379:-
Coord C1 exon
chr4:64431354-64431379
Coord A exon
chr4:64393231-64393268
Coord C2 exon
chr4:64389860-64389980
Length
38 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTTGTCGTTCACAGCAA
3' ss Score
11.08
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCACCAGTCTCTTCGGAAGATCATG
Seq A exon
CAATTCTGCAGGCAGTCATAACTGGTGACCTTATGAAG
Seq C2 exon
CTCATGGAAAGCTATAAGAATGGAGGGAGTTTATTAATTCAGGGACCCGGGCACTGTTCCCTCCTTCACTACGCAGCCAAGACTGGCAATGGGGAGATCGTGAAGTACATCCTTGACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'47-49,'47-48,48-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(10.4=84.6)
C2:
PF127962=Ank_2=PU(20.2=46.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCAGTCTCTTCGGAAGA
R:
CGATCTCCCCATTGCCAGTCT
Band lengths:
126-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]