BtaEX0011207 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:101869621-101919376:-
Coord C1 exon
chr4:101919351-101919376
Coord A exon
chr4:101888134-101888171
Coord C2 exon
chr4:101869621-101869657
Length
38 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTTGTCTTTCACAGCAA
3' ss Score
11.46
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCACCAGTCTCTTCAGAAGATCACG
Seq A exon
CAATTTTGCAGGCAGTAATAGCTGGTGATCTTATGAAG
Seq C2 exon
GACCGTCCGAGTTATTGGATATGGCAGACAGTGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGTCTCTTCAGAAGATCACG
R:
GTTTCACTGTCTGCCATATCCA
Band lengths:
61-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development