GgaEX6002517 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59691940-59707824:+
Coord C1 exon
chr1:59691940-59691965
Coord A exon
chr1:59706120-59706157
Coord C2 exon
chr1:59707704-59707824
Length
38 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTGTCTTTTGCAGCAC
3' ss Score
12.35
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTCACCAGTTTCTTCAGAAGATCAAG
Seq A exon
CACTTTTACAGGCAGTCATAGCTGGTGATCTGCTGAAG
Seq C2 exon
TTCATAGAATGCTGTAAAAAAGGAGCCAATTTGCTAATCCAAGGACCTGACCACGGCTCCCTGTTGCACCACGCTGCCAAGAGTGGGCATGGCGAGATTGTGAAGTATATCCTGGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'32-32,'32-31,33-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(20.7=46.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCAGTTTCTTCAGAAGATCA
R:
AATCTCGCCATGCCCACTCTT
Band lengths:
125-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]