MmuEX0014429 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36862356-36894801:-
Coord C1 exon
chr6:36894776-36894801
Coord A exon
chr6:36865791-36865828
Coord C2 exon
chr6:36862356-36862476
Length
38 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTTGTCTTTCGCAGCAA
3' ss Score
11.41
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTCCCCAGTCTCTTCAGAAGATCATG
Seq A exon
CAATTTTGCAGGCAGTCCTCACCGGTGACCTTATGAAG
Seq C2 exon
CTCATGGAGAGCTATAAGAATGGAGGGAGCTTACTAATTCAGGGACCAGGGCACTGTTCTCTCCTTCACTACGCAGCTAAGACCGGCAATGGGGACATTGTGAAGTACATCCTTGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665-'60-60,'60-59,61-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(20.2=46.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCAGTCTCTTCAGAAGA
R:
ATGTCCCCATTGCCGGTCTTA
Band lengths:
124-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types