HsaEX0019454 @ hg19
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137092621-137128848:-
Coord C1 exon
chr7:137128823-137128848
Coord A exon
chr7:137096916-137096953
Coord C2 exon
chr7:137092621-137092741
Length
38 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTTGTCTTTCACAGCAA
3' ss Score
11.46
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCACCAGTCTCTTCAGAAGATCATG
Seq A exon
CAATTTTGCAGGCAGTAATAGCTGGTGATCTTATGAAG
Seq C2 exon
CTAATAGAAAGCTATAAAAATGGAGGCAGTCTGCTAATTCAGGGACCAGACCACTGTTCACTCCTTCACTACGCAGCTAAAACCGGCAACGGGGAGATTGTGAAATATATCCTTGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(20.2=46.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCAGTCTCTTCAGAAGATCA
R:
CCGGTTTTAGCTGCGTAGTGA
Band lengths:
112-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)