GgaEX6002517 @ galGal4
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr1:57765489-57782018:+
Coord C1 exon
chr1:57765489-57765514
Coord A exon
chr1:57780314-57780351
Coord C2 exon
chr1:57781898-57782018
Length
38 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTGTCTTTTGCAGCAC
3' ss Score
12.35
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTCACCAGTTTCTTCAGAAGATCAAG
Seq A exon
CACTTTTACAGGCAGTCATAGCTGGTGATCTGCTGAAG
Seq C2 exon
TTCATAGAATGCTGTAAAAAAGGAGCCAATTTGCTAATCCAAGGACCTGACCACGGCTCCCTGTTGCACCACGCTGCCAAGAGTGGGCATGGCGAGATTGTGAAGTATATCCTGGAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'43-34,'43-33,44-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(11.5=100)
A:
PF127962=Ank_2=FE(15.4=100)
C2:
PF127962=Ank_2=FE(51.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCAGTTTCTTCAGAAGATCA
R:
AATCTCGCCATGCCCACTCTT
Band lengths:
125-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]