MmuEX6103068 @ mm10
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91934166-91935112:-
Coord C1 exon
chr2:91935081-91935112
Coord A exon
chr2:91934816-91934859
Coord C2 exon
chr2:91934166-91934286
Length
44 bp
Sequences
Splice sites
3' ss Seq
TGGGCAGCTCTTCTGTGCAGGTG
3' ss Score
5.22
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTCAATGCAGGGGGACACTGCACTGCCCCAAG
Seq A exon
GTGAAGAACTGATTGAAGCAGCCAAGAGGAATGACTGCTGCAAG
Seq C2 exon
CTCCAGGAGCTACACCGAGCAGGAGGTGACCTCATGCACCGTGACCAGAAGAGCCGCACGCTCTTGCACCACGCGGTCAGCACTGGCAGTAAGGAAGTGGTCCGCTATCTGCTGGATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.200 C2=0.463
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(11.6=73.3)
C2:
PF127962=Ank_2=FE(42.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATGCAGGGGGACACTG
R:
CCACTTCCTTACTGCCAGTGC
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types