BtaEX6060532 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77246855-77247735:+
Coord C1 exon
chr15:77246855-77246893
Coord A exon
chr15:77247145-77247188
Coord C2 exon
chr15:77247615-77247735
Length
44 bp
Sequences
Splice sites
3' ss Seq
CAGGCTGGTGTTCCGAGCAGGTG
3' ss Score
4.3
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
TTTGCAGGTCACTGCCAGGGGACGCTGCGCCCCCTACAG
Seq A exon
GTGAAGAGCTCATCGAGGCTGCAAAGAGGAACGATTTCTGTAAG
Seq C2 exon
CTCCAGGAGCTGCACCGAGCTGGGGGTGACCTTATGCACCGTGTTGAGCGGAGCCGCACGCTCCTGCACCACGCGGTCAGCACCGGCAGCAAGGAAGTGGTCCGCTACCTGCTGGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636-'37-46,'37-44,39-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.400 C2=0.439
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(5.5=42.9)
A:
PF127962=Ank_2=FE(12.8=100)
C2:
PF127962=Ank_2=FE(36.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCACTGCCAGGGGAC
R:
GTAGCGGACCACTTCCTTGC
Band lengths:
142-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]