DreEX6006480 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38865718-38871797:+
Coord C1 exon
chr7:38865718-38865752
Coord A exon
chr7:38868992-38869041
Coord C2 exon
chr7:38871677-38871797
Length
50 bp
Sequences
Splice sites
3' ss Seq
TCATCTCATTTCTTTAACAGTGT
3' ss Score
8.37
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTTGAGAAGAGCGCTGTGAACAATGCCAACTCTG
Seq A exon
TGTCAGTGGACAGTCTAATTGAATGTGTGAAAAAGAAGGACCATCAGAAG
Seq C2 exon
TTGAAGGAGCTGCATAAGAAAGGGGCCGACCTGTGTGTGCAGGACCCTGCTGGACGGACCCTATTGCACTATGCTGTGGAAGTGGGCAGCAAGGAGATTGTCAAATACATCATTGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'40-43,'40-42,42-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF054077=Peptidase_C27=FE(16.0=100)
A:
PF127962=Ank_2=FE(18.0=100)
C2:
PF127962=Ank_2=FE(44.9=100),PF127962=Ank_2=PU(1.3=2.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCGCTGTGAACAATGC
R:
TTGACAATCTCCTTGCTGCCC
Band lengths:
133-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]