MmuEX1008426 @ mm10
Exon Skipping
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91935907-91936565:-
Coord C1 exon
chr2:91936525-91936565
Coord A exon
chr2:91936317-91936373
Coord C2 exon
chr2:91935907-91936082
Length
57 bp
Sequences
Splice sites
3' ss Seq
CACATGTCCCCACCCTCCAGGAA
3' ss Score
9.08
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CCACCACTGCCAGCCGCTTCTACAGGATCGACAGAGCCCAG
Seq A exon
GAATGCACAGGGATGGCGCCAACAGAAAAAGCTGGCATGCCAGAAAAGGCTTTCTAG
Seq C2 exon
GTCTGCTGCCTTGCTTCTGGTCCCCAAACCGCCCCCCGCCACTGGAAACTAAGGGCCGTGTGCCCAGCACGGACGGACGGACGGACGGACCGACCTTCAGTTCTAACCCCCTCCCCGACAGGAGCACCTCAACTATGTGACGGAGATTGCCCAGGACGAGATTTACATCCTAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-'53-76,'53-75,54-76
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.833 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSMUST00000111303fB8737
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTTCTACAGGATCGACAG
R:
GGGGAGGGGGTTAGAACTGAA
Band lengths:
144-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types