DreEX0026721 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7733986-7742378:+
Coord C1 exon
chr25:7733986-7734017
Coord A exon
chr25:7736885-7736934
Coord C2 exon
chr25:7739275-7742378
Length
50 bp
Sequences
Splice sites
3' ss Seq
AATAAACTCTTGTTTTTCAGATT
3' ss Score
9.07
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTTAGACACGGTCTGGAATAAGAGTGATCAAG
Seq A exon
ATTCAACCAATTTGCTCTTTGATGCTGTGAAGTCTGGCAACTTGGAAAAG
Seq C2 exon
GGTGAAACTCCAAAGATGTACGCAGAGAGAACTCGAGACTACGAGCTAGCTGAATATTTGGAAAACCAACAACACCATCAAATGATCCAGAGAGATGACCATGAGACGGCAGTGTGACTGGACATCTTTTCTGTCCACCACTAAAACCACAGCCACCGTCTCAACGGTGGCCAGTTTGATACAGTATACGGCCACATGTTAGCAATGCTACGTGGCAGCATATGTGTGGAAATGACCATGTTCGCTCTCTGTATTGATCGTAACGCCAAGCAGACAGTGTTTGTGTCACGTTTCTGAACGCATGAGTCCCGTCCTGATGCAAAACTGCATCGCTCTGCTCTTTAGGACAGGATTAGGAAAAAAAATTGTGGAATTTCAGGGCTGAAGCGAAGTACTATTACTTTTATTACTATTTTATTACTATTACTATTCATTTTAAAAACTACTCTTGTTCTCATCAGGGCTGGGCCGATAAACGATATTATATCGAATTGCAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025_MULTIEX1-5/8=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.118 C2=0.526
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(12.9=100)
A:
PF127962=Ank_2=FE(18.8=100)
C2:
PF127962=Ank_2=PD(39.0=76.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACGGTCTGGAATAAGAGTGA
R:
TGCCGTCTCATGGTCATCTCT
Band lengths:
140-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]