RnoEX0027567 @ rn6
Exon Skipping
Gene
ENSRNOG00000017737 | Dgkz
Description
diacylglycerol kinase zeta [Source:RGD Symbol;Acc:70929]
Coordinates
chr3:80845338-80846363:-
Coord C1 exon
chr3:80846332-80846363
Coord A exon
chr3:80846065-80846108
Coord C2 exon
chr3:80845338-80845458
Length
44 bp
Sequences
Splice sites
3' ss Seq
TGGACAGATCTTTTGTGCAGGTG
3' ss Score
4.64
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTCACTGCAGGGGGATGCCGCACTGCCCCAAG
Seq A exon
GTGAAGAGCTGATTGAAGCTGCCAAGAGGAATGACTTCTGCAAG
Seq C2 exon
CTCCAGGAACTACACCGAGCAGGAGGTGACCTCATGCACCGCGACCATCAGAGCCGCACACTCCTGCACCACGCAGTCAGCACTGGCAGTAAGGAAGTGGTCCGCTATCTGCTCGATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017737-'51-60,'51-57,52-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.200 C2=0.463
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138571=Ank_5=PU(7.0=9.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGCAGGGGGATGC
R:
CCACTTCCTTACTGCCAGTGC
Band lengths:
132-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]