GgaEX6037743 @ galGal3
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
NA
Coordinates
chr5:25810803-25811977:-
Coord C1 exon
chr5:25811946-25811977
Coord A exon
chr5:25811105-25811145
Coord C2 exon
chr5:25810803-25810923
Length
41 bp
Sequences
Splice sites
3' ss Seq
CAACCCATCTCTCTTTGCAGATG
3' ss Score
11.33
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGCTGACGCTGAGCTCTGCCTCCCGCACAAAG
Seq A exon
ATGACCTGATAGAAGCTGCCAAGACTGGTAACTTCAGCAAG
Seq C2 exon
TTCCAAGAGCTGCACCGAGCTGGAAGAGACCTGATGGTGCGAGACTCCTCTGGCCGAACTGTCCTCCACCATGCTGTCGTATCAGGGAGCAAGGACATCGTCAAATACATAATTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'31-30,'31-29,32-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.146
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(13.7=83.3)
A:
PF127962=Ank_2=FE(17.8=100)
C2:
PF127962=Ank_2=FE(58.0=100),PF127962=Ank_2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACGCTGAGCTCTGCCTC
R:
TTTGACGATGTCCTTGCTCCC
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]