GgaEX6037743 @ galGal4
Exon Skipping
Gene
ENSGALG00000008380 | DGKZ
Description
diacylglycerol kinase zeta [Source:RefSeq peptide;Acc:NP_001026363]
Coordinates
chr5:22955380-22956554:-
Coord C1 exon
chr5:22956523-22956554
Coord A exon
chr5:22955682-22955722
Coord C2 exon
chr5:22955380-22955500
Length
41 bp
Sequences
Splice sites
3' ss Seq
CAACCCATCTCTCTTTGCAGATG
3' ss Score
11.33
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGCTGACGCTGAGCTCTGCCTCCCGCACAAAG
Seq A exon
ATGACCTGATAGAAGCTGCCAAGACTGGTAACTTCAGCAAG
Seq C2 exon
TTCCAAGAGCTGCACCGAGCTGGAAGAGACCTGATGGTGCGAGACTCCTCTGGCCGAACTGTCCTCCACCATGCTGTCGTATCAGGGAGCAAGGACATCGTCAAATACATAATTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008380-'45-48,'45-47,48-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.146
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(14.3=83.3)
A:
PF127962=Ank_2=FE(18.6=100)
C2:
PF127962=Ank_2=FE(57.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACGCTGAGCTCTGCCTC
R:
TTTGACGATGTCCTTGCTCCC
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]