GgaEX1020788 @ galGal4
Exon Skipping
Gene
ENSGALG00000004485 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:RefSeq peptide;Acc:NP_001025860]
Coordinates
chr17:5482954-5484226:+
Coord C1 exon
chr17:5482954-5483049
Coord A exon
chr17:5483160-5483339
Coord C2 exon
chr17:5484126-5484226
Length
180 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTAACACTTTTTCAGGTA
3' ss Score
9.39
5' ss Seq
AGTGTATAG
5' ss Score
-6.43
Exon sequences
Seq C1 exon
GTCAGTTCGTAGAGTATAACTTATATGAAGCCGTAAGGGGCATGATGCTCTGTTGTTGGCTAGCTGATGCATCTACTTCCACTTTGCATTACCATG
Seq A exon
GTAATGAACAGAATAAAACCTCGCTCCAACCAAACCCCAGTATTCTTGGGGGTTCATCCTGCAAGTCTCCTGAATTTCGCTGGTGTTACAAACTAAAACGTGGGAATTCTGCTTGATGATGAAGTTGTTCCCAAATCTAATTCTTCAGGGAACAGAAGCAGGACAGACTTGGATTATAGT
Seq C2 exon
GTGATTTCTCTGGTCAGCTTTTAGCTTATTTGAGTCTTGGTCCAATATTCATTATTGTTGGCTTTGTAACGCTCATCATATTCAAGAGAGAGCTTCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004485-'7-5,'7-4,8-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.395 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0156916=PAP2=PU(0.8=2.9)
Main Inclusion Isoform:
ENSGALT00000007143fB6931
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTAGAGTATAACTTATATGAAGCCG
R:
CGTGTGAAGCTCTCTCTTGAA
Band lengths:
190-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]