GgaEX0006039 @ galGal4
Exon Skipping
Gene
ENSGALG00000004485 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:RefSeq peptide;Acc:NP_001025860]
Coordinates
chr17:5477916-5486015:+
Coord C1 exon
chr17:5477916-5478012
Coord A exon
chr17:5484126-5484226
Coord C2 exon
chr17:5485931-5486015
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGTTTGTTTCCCTAGGTG
3' ss Score
12.46
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CCGGCCCGGTATCCGGGTAAGATGGCCGCAGTCGGAGAGTGCTCGCTCCCCGCTCCGTGGCGGCCGGTCTCCCTCACTCACGTCGAGTATCCCGCAG
Seq A exon
GTGATTTCTCTGGTCAGCTTTTAGCTTATTTGAGTCTTGGTCCAATATTCATTATTGTTGGCTTTGTAACGCTCATCATATTCAAGAGAGAGCTTCACACG
Seq C2 exon
ATCTCTTTCTTGGGAGGGCTGGCTTTCAACGAGGGAGTGAACTGGTTAATAAAAAATGTTATCCGGGAGCCACGGCCCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004485-'1-8,'1-5,9-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0156916=PAP2=PU(0.8=2.9)
C2:
PF0156916=PAP2=FE(21.5=100)
Main Skipping Isoform:
ENSGALT00000007143fB6931
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCCGGGTAAGATGGCCG
R:
TTCACAGGGCCGTGGCTC
Band lengths:
174-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]