HsaEX6063398 @ hg19
Exon Skipping
Gene
ENSG00000167130 | DOLPP1
Description
dolichyl pyrophosphate phosphatase 1 [Source:HGNC Symbol;Acc:29565]
Coordinates
chr9:131843379-131847386:+
Coord C1 exon
chr9:131843379-131843486
Coord A exon
chr9:131846947-131847047
Coord C2 exon
chr9:131847302-131847386
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCTCTGTCTTGCCAGGTG
3' ss Score
11.94
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGCTGCTCGAAGAAGCCCGGTCTCCGGGTAAGATGGCAGCGGACGGACAGTGCTCGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTCGAATATCCTGCAG
Seq A exon
GTGATCTCTCTGGCCACCTCCTTGCCTACCTGAGCCTCAGCCCTGTATTTGTCATCGTCGGTTTCGTGACCCTCATCATATTTAAGCGGGAGCTGCACACG
Seq C2 exon
ATCTCCTTCCTTGGGGGCCTGGCACTGAACGAGGGGGTCAACTGGCTGATCAAAAACGTCATCCAGGAGCCACGGCCCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167130-'0-3,'0-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0156916=PAP2=PU(0.8=2.9)
C2:
PF0156916=PAP2=FE(21.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCGAAGAAGCCCG
R:
GTGGCTCCTGGATGACGTTTT
Band lengths:
180-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)