BtaEX6046607 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017922 | DOLPP1
Description
Bos taurus dolichyl pyrophosphate phosphatase 1 (DOLPP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192041]
Coordinates
chr11:99563895-99568274:+
Coord C1 exon
chr11:99563895-99563996
Coord A exon
chr11:99567881-99567981
Coord C2 exon
chr11:99568190-99568274
Length
101 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCCCTGTCTTCCCAGGTG
3' ss Score
12.88
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TGGGCGAAGCCCGGTCTCCGGGTAAGATGGCAGCGGACGGACAGTGCTCGCTCCCCGCTTCATGGCGGCCGGTGACCCTCACCCACGTCGAATATCCTGCAG
Seq A exon
GTGACCTCTCTGGCCACGTCCTCGCCTACCTGAGCCTCAGCCCCGTATTTGTCATTGTTGGTTTCGTGACCCTCATTATATTCAAGCGGGAGCTGCACACG
Seq C2 exon
ATCTCGTTCCTGGGGGGCCTGGCGCTCAACGAGGGGGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCACGGCCCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017922-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0156916=PAP2=PU(0.8=2.9)
C2:
PF0156916=PAP2=FE(21.5=100)
Main Skipping Isoform:
ENSBTAT00000023834fB2252
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCCGGGTAAGATGGCAG
R:
TGGCTCCTGGATGACGTGTTT
Band lengths:
162-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]