RnoEX6016309 @ rn6
Exon Skipping
Gene
ENSRNOG00000017663 | Dolpp1
Description
dolichyldiphosphatase 1 [Source:RGD Symbol;Acc:1307447]
Coordinates
chr3:8958090-8961852:+
Coord C1 exon
chr3:8958090-8958406
Coord A exon
chr3:8961461-8961561
Coord C2 exon
chr3:8961768-8961852
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTATTCCTCTGTCCCCACAGGTG
3' ss Score
13.41
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
CTTGATTGGCTAGACAACTACCTGAGCTCGCACAGGATTGGGCATTGGCAAAGCTGAAGAGGGTCCTCGCTCTCTGATTCGCCGCACGGGCCAGCCTCACGGCCTGCACACTGAATGGCTGCGCCACTACCTGCAATCGGCCTCGGATTGGGTGCGTGGCGTCTACCCGGCGTGATAGGTCAGGACCACCGCCCCCCTTGTTCCCCATTGGCTGCTGGGCGAAGCCCGGTCTCCGGGTAAGATGGCAGCGGACGGACAGTGCTCGCTCCCCGCTTCATGGCGGCCAGTGACCCTCACCCACGTCGAATACCCTGCAG
Seq A exon
GTGATCTGTCTGGCCACCTCCTGGCCTACCTGAGCCTCAGCCCTATTTTTGTCATTGTTGGTTTTGTGACCCTCATCATATTCAAGCGGGAGCTACACACG
Seq C2 exon
ATTTCATTCCTCGGGGGACTGGCACTGAATGAGGGTGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCTCGGCCCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017663-'0-2,'0-0,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0156916=PAP2=PU(0.9=2.9)
C2:
PF0156916=PAP2=FE(25.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACCTGCAATCGGCCTC
R:
GATCAGCCAGTTGACACCCTC
Band lengths:
244-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]