MmuEX0015500 @ mm9
Exon Skipping
Gene
ENSMUSG00000026856 | Dolpp1
Description
dolichyl pyrophosphate phosphatase 1 [Source:MGI Symbol;Acc:MGI:1914093]
Coordinates
chr2:30247774-30251581:+
Coord C1 exon
chr2:30247774-30248032
Coord A exon
chr2:30251179-30251279
Coord C2 exon
chr2:30251497-30251581
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCTCTGTCCCCACAGGTG
3' ss Score
14.41
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GCGAGTCCCCGCTCTCTGATTCGCCGCACGGGCCAGCCTCACGACCTGCACACTGAATGGCTGCGCCACTACCTGCAATCGGCCTCGGATTGGGTGCGTGGCGTCTCCCCGGCGTGATAGGTCAGGACCACCGCCCCCCTTGCTCCCCATTGGCTGCTCTGCGAAGCCCGGTCTCCGGGTAAGATGGCAGCGGACGGACAGTGCTCGCTCCCCGCTTCATGGCGGCCAGTGACCCTCACCCACGTCGAATACCCTGCAG
Seq A exon
GTGATCTGTCTGGCCACCTCCTGGCCTACCTGAGCCTCAGCCCTATTTTTGTCGTTGTTGGTTTTTTGACTCTCATCATATTCAAGCGGGAGCTACACACG
Seq C2 exon
ATTTCATTCCTTGGGGGACTGGCACTGAATCAGGGCGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCTCGGCCCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026856-'0-5,'0-3,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0156916=PAP2=PU(0.8=2.9)
C2:
PF0156916=PAP2=FE(21.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGACCTGCACACTGAATG
R:
GCCCTGATTCAGTGCCAGTC
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: