DreEX6082820 @ danRer10
Exon Skipping
Gene
ENSDARG00000036915 | dolpp1
Description
dolichyldiphosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-041024-11]
Coordinates
chr21:3733037-3739434:+
Coord C1 exon
chr21:3733037-3733149
Coord A exon
chr21:3737156-3737256
Coord C2 exon
chr21:3739350-3739434
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTTTTGCTGTCCAGGCG
3' ss Score
8.65
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
TGATTGGTCGACGACCGATGCCCGGTGTCCGGGTAAGATGGCGTCGGAAGAGCAGTGCTCGGCACCACCTCGATGGCGGTCGATATCCTTAACCCACGTAGAATATCCGGCAG
Seq A exon
GCGATCTGACGGGGCAGGTATTGGCCTACATGAGCCTGCTGCCCATCGCGATCCTTGTCGGATTCGTCACTCTGATCGTCTTTAAGCGAGAACTACATACG
Seq C2 exon
ATCTCATTTTTCGGGGGTCTGATCATGAACGAGGGCTTAAACTGGCTGCTCAAACACATCCTACAGGAGCCTCGGCCGTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036915-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0156916=PAP2=PU(0.8=2.9)
C2:
PF0156916=PAP2=FE(21.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGTCCGGGTAAGATGGC
R:
ACGGCCGAGGCTCCTGTA
Band lengths:
170-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]