GgaINT1011793 @ galGal4
Intron Retention
Gene
ENSGALG00000004485 | DOLPP1
Description
dolichyldiphosphatase 1 [Source:RefSeq peptide;Acc:NP_001025860]
Coordinates
chr17:5484126-5486015:+
Coord C1 exon
chr17:5484126-5484226
Coord A exon
chr17:5484227-5485930
Coord C2 exon
chr17:5485931-5486015
Length
1704 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CAGTTGTCTTGCCTTCACAGATC
3' ss Score
9.4
Exon sequences
Seq C1 exon
GTGATTTCTCTGGTCAGCTTTTAGCTTATTTGAGTCTTGGTCCAATATTCATTATTGTTGGCTTTGTAACGCTCATCATATTCAAGAGAGAGCTTCACACG
Seq A exon
GTGAGTCTTCCTCTCCCTTCCTGGCTTCTCCTTACGACAGAAATCCTGTCATTTGTGACACAGTGCTCCTGTTTTCACACTTCTGCTCTTTATAAACAGAAAAAAAAAAGCTTAGGTAAGGTGATCTGCTGTCAGCACCAGAAGATGCTATCATTTGTAACAGGTTAAAAGATGAGTCTTTGCTGATGTTCTGCTACTCTGTGCTATGCTTTAGCCATGTCTGTGCACAGACATCCATGAGAGATATCTGAGATTCAGTGCTGCTTCATGGTGGGATATAGTAGTATTTCTACCTTGATCCAAAATCCATTAGGGTAATAGCGTTGGCAGGGTTTGCAAGATGGATAATGTGCAGGAAATAGTGTCTGACTCAGTAGGATGTGCTTTCTTTGAACAGCACGGAGGCACAAAATAAGATTCAAAATAAAACCTACAAATTCCTGCGGGACTGGATCTGTCTCAGGGCTGCTTCCCAGCTGTGCATTGAACAGCGGGGACGGAAGAGACTCTTGCTTCTGTCCAAGTGAGCAATAAAGGACTCTTCTATAGTGCTTTGTCTGCTCTGACAGGTGGTTGGGAGTCGGTGTCATGGATAAATGCTCTTCAGGAGGTATGAAGCACTTGTAAAATTTGCCCTCAGTAAACACATAAAATGGGGCCACTGAAAGAATTTTGGCAGCAGGTTCCTGATACAAGGCCATGGTGTCATGGGAACCAGTGGCTCAAGGGACCTGGGAATGGGACTTCTAGGTTCCTAAACCGAAGGAAAGACAGCTGTTAAATTTAGACAATCCAACTTTTTATTTTTTTTTTGCTGACCCAAGGCTGAACATAATCAGTAGTAAGTATTGTCTTAAAATTAACGGTGTTTTGAGTGCACTGACTTGTTAGATATTGGTGATGCAGCACGGGTTGAGATTGGTTCCTAGTAGATGTGAAAAGTCTCCTTTGAGGTGGTGTGAGGCACCAGCTGCCCACAGATCAGCACAGAGAGTGGAAAACGCAAGTAGGACTGAGTGTTAAAGAGTTGTTGGAGCATCATCACCAGCTGGGAATTTTGTCGCAGCAATGGGACTTAATCTAGAGGGGGTGTATGAAATCATGGTGATCTTAGAAGGTCTTTTCCACCCTTCAAGTCCAACTGTCAACCCATCGCCACTGCAGCTGCTAATGGACTTTGGAATAAGAAAAACAGCAATTGCTGCCAGTCTGTCTCAGTTCAGAATGTGACTTCATTTTAGACTGAGGACAGCAGCTTCAGGATGAAAATATTCATAGAGGAGAAAAGCCAGAAAGCCTAAAAAAATTGCTGTTTGAGCTAATTGCCCAAATAATGGTGGATGTGCTCCCCCTGTTGGCCGACGGTGACAGACAATCCCTTCAAACTTGCTGTGTTAAAAAGTATTACTTTCTGTGCTTGCTGATGGGAGAATGCCAACATTATTGCTGTACAAGTGTCATTTTTGTCCTCTGAGTTATCTGCTTAAAAGCTTTGTGTGCACAATATGTTGTCAGGTACACGAAGGAGACTGAGAAATAAATGCTTTTCTTCCTCAGCTAGAGCATTGTGAAGCTGTTGGTTATAATACAGGTAGTCAGAAAAGAAAATTAGAAATGCATGACTTGGGGGTTTCTCGACAGAGAGAACCTGGTAAGTAGATGAATCTTTTTAAATAGGATGACACAGTTGTCTTGCCTTCACAG
Seq C2 exon
ATCTCTTTCTTGGGAGGGCTGGCTTTCAACGAGGGAGTGAACTGGTTAATAAAAAATGTTATCCGGGAGCCACGGCCCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004485:ENSGALT00000007143:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(0.8=2.9)
A:
NA
C2:
PF0156916=PAP2=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTTCTCTGGTCAGCTTTTAGC
R:
TTCACAGGGCCGTGGCTC
Band lengths:
185-1889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]