RnoINT0050548 @ rn6
Intron Retention
Gene
ENSRNOG00000017663 | Dolpp1
Description
dolichyldiphosphatase 1 [Source:RGD Symbol;Acc:1307447]
Coordinates
chr3:8961461-8961852:+
Coord C1 exon
chr3:8961461-8961561
Coord A exon
chr3:8961562-8961767
Coord C2 exon
chr3:8961768-8961852
Length
206 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
ATGCACATCTTTCCCAGCAGATT
3' ss Score
6.57
Exon sequences
Seq C1 exon
GTGATCTGTCTGGCCACCTCCTGGCCTACCTGAGCCTCAGCCCTATTTTTGTCATTGTTGGTTTTGTGACCCTCATCATATTCAAGCGGGAGCTACACACG
Seq A exon
GTGAGCTTGGCCCCATCCTCCGTCCGTTGATCAGAACCATCTTTTGGTCTACAGTGCCTTCCCCTGCAAAGCCTGTAGGGGTCCCCTGGCTGGGTCCAGGTCCTTCACTTGTTGGTCTGGGCTGTCCATTGAGAGGCTGCCCTCTCAGGGACAGGGTGGCCAGCAGGTGTGCTGAGGCCCAGCTAAATGCACATCTTTCCCAGCAG
Seq C2 exon
ATTTCATTCCTCGGGGGACTGGCACTGAATGAGGGTGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCTCGGCCCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017663:ENSRNOT00000064557:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(0.9=2.9)
A:
NA
C2:
PF0156916=PAP2=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTGTCTGGCCACCTCC
R:
AGGCTCCTGGATGACGTGTTT
Band lengths:
172-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]