GgaINT0124674 @ galGal3
Intron Retention
Gene
ENSGALG00000004485 | DOLPP1
Description
NA
Coordinates
chr17:6039517-6041406:+
Coord C1 exon
chr17:6039517-6039617
Coord A exon
chr17:6039618-6041321
Coord C2 exon
chr17:6041322-6041406
Length
1704 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CAGTTGTCTTGCCTTCACAGATC
3' ss Score
9.4
Exon sequences
Seq C1 exon
GTGATTTCTCTGGTCAGCTTTTAGCTTATTTGAGTCTTGGTCCAATATTCATTATTGTTGGCTTTGTAACGCTCATCATATTCAAGAGAGAGCTTCACACG
Seq A exon
GTGAGTCTTCCTCTCCCTTCCTGGCTTCTCCTTACGACAGAAATCCTGTCATTTGTGACACAGTGCTCCTGTTTTCACACTTCTGCTCTTTATAAACAGAAAAAAAAAAGCTTAGGTAAGGTGATCTGCTGTCAGCACCAGAAGATGCTATCATTTGTAACAGGTTAAAAGATGAGTCTTTGCTGATGTTCTGCTACTCTGTGCTATGCTTTAGCCATGTCTGTGCACAGACATCCATGAGAGATATCTGAGATTCAGTGCTGCTTCATGGTGGGATATAGTAGTATTTCTACCTTGATCCAAAATCCATTAGGGTAATAGCGTTGGCAGGGTTTGCAAGATGGATAATGTGCAGGAAATAGTGTCTGACTCAGTAGGATGTGCTTTCTTTGAACAGCACGGAGGCACAAAATAAGATTCAAAATAAAACCTACAAATTCCTGCGGGACTGGATCTGTCTCAGGGCTGCTTCCCAGCTGTGCATTGAACAGCGGGGACGGAAGAGACTCTTGCTTCTGTCCAAGTGAGCAATAAAGGACTCTTCTATAGTGCTTTGTCTGCTCTGACAGGTGGTTGGGAGTCGGTGTCATGGATAAATGCTCTTCAGGAGGTATGAAGCACTTGTAAAATTTGCCCTCAGTAAACACATAAAATGGGGCCACTGAAAGAATTTTGGCAGCAGGTTCCTGATACAAGGCCATGGTGTCATGGGAACCAGTGGCTCAAGGGACCTGGGAATGGGACTTCTAGGTTCCTAAACCGAAGGAAAGACAGCTGTTAAATTTAGACAATCCAACTTTTTATTTTTTTTTTGCTGACCCAAGGCTGAACATAATCAGTAGTAAGTATTGTCTTAAAATTAACGGTGTTTTGAGTGCACTGACTTGTTAGATATTGGTGATGCAGCACGGGTTGAGATTGGTTCCTAGTAGATGTGAAAAGTCTCCTTTGAGGTGGTGTGAGGCACCAGCTGCCCACAGATCAGCACAGAGAGTGGAAAACGCAAGTAGGACTGAGTGTTAAAGAGTTGTTGGAGCATCATCACCAGCTGGGAATTTTGTCGCAGCAATGGGACTTAATCTAGAGGGGGTGTATGAAATCATGGTGATCTTAGAAGGTCTTTTCCACCCTTCAAGTCCAACTGTCAACCCATCGCCACTGCAGCTGCTAATGGACTTTGGAATAAGAAAAACAGCAATTGCTGCCAGTCTGTCTCAGTTCAGAATGTGACTTCATTTTAGACTGAGGACAGCAGCTTCAGGATGAAAATATTCATAGAGGAGAAAAGCCAGAAAGCCTAAAAAAATTGCTGTTTGAGCTAATTGCCCAAATAATGGTGGATGTGCTCCCCCTGTTGGCCGACGGTGACAGACAATCCCTTCAAACTTGCTGTGTTAAAAAGTATTACTTTCTGTGCTTGCTGATGGGAGAATGCCAACATTATTGCTGTACAAGTGTCATTTTTGTCCTCTGAGTTATCTGCTTAAAAGCTTTGTGTGCACAATATGTTGTCAGGTACACGAAGGAGACTGAGAAATAAATGCTTTTCTTCCTCAGCTAGAGCATTGTGAAGCTGTTGGTTATAATACAGGTAGTCAGAAAAGAAAATTAGAAATGCATGACTTGGGGGTTTCTCGACAGAGAGAACCTGGTAAGTAGATGAATCTTTTTAAATAGGATGACACAGTTGTCTTGCCTTCACAG
Seq C2 exon
ATCTCTTTCTTGGGAGGGCTGGCTTTCAACGAGGGAGTGAACTGGTTAATAAAAAATGTTATCCGGGAGCCACGGCCCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004485:ENSGALT00000007143:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(0.8=2.9)
A:
NA
C2:
PF0156916=PAP2=FE(21.5=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTTCTCTGGTCAGCTTTTAGC
R:
TTCACAGGGCCGTGGCTC
Band lengths:
185-1889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]