MmuINT0052623 @ mm10
Intron Retention
Gene
ENSMUSG00000026856 | Dolpp1
Description
dolichyl pyrophosphate phosphatase 1 [Source:MGI Symbol;Acc:MGI:1914093]
Coordinates
chr2:30395659-30396061:+
Coord C1 exon
chr2:30395659-30395759
Coord A exon
chr2:30395760-30395976
Coord C2 exon
chr2:30395977-30396061
Length
217 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
GTGCCTGTCTTTGCCAGCAGATT
3' ss Score
7.82
Exon sequences
Seq C1 exon
GTGATCTGTCTGGCCACCTCCTGGCCTACCTGAGCCTCAGCCCTATTTTTGTCGTTGTTGGTTTTTTGACTCTCATCATATTCAAGCGGGAGCTACACACG
Seq A exon
GTGAGCTTTGGCCCCAGCTGTTAGCCAGAACCCTCTTTTGGCCTATGGTGCCTTCGCCTGCAAAGCCTGTAGGGATCTCCTGGCTGGGCCCAGGTCCTTCACTTACTGGCCTGCGCTGTGCATTGAGAGACCACAGTTCCCGGCACTGGGTGGCAGGGACTGGGTGGAAGCCAGCAGGTATGCAGAGGCCCAGCTGAGTGCCTGTCTTTGCCAGCAG
Seq C2 exon
ATTTCATTCCTTGGGGGACTGGCACTGAATCAGGGCGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCTCGGCCCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026856:ENSMUST00000028209:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(0.8=2.9)
A:
NA
C2:
PF0156916=PAP2=FE(21.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTGTCTGGCCACCTCC
R:
AGGCTCCTGGATGACGTGTTT
Band lengths:
172-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types