BtaINT0052103 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017922 | DOLPP1
Description
Bos taurus dolichyl pyrophosphate phosphatase 1 (DOLPP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192041]
Coordinates
chr11:99567881-99568274:+
Coord C1 exon
chr11:99567881-99567981
Coord A exon
chr11:99567982-99568189
Coord C2 exon
chr11:99568190-99568274
Length
208 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
ACTACACGTCTTCCCGGCAGATC
3' ss Score
9.63
Exon sequences
Seq C1 exon
GTGACCTCTCTGGCCACGTCCTCGCCTACCTGAGCCTCAGCCCCGTATTTGTCATTGTTGGTTTCGTGACCCTCATTATATTCAAGCGGGAGCTGCACACG
Seq A exon
GTGAGTCCCGCTGCGCCACGGCCCCACCCCGGGGAGGAGGGGCCTCCCCATCCCATCCCAGGTGCTTAGCTTTCCCTTCCACGCCGCCACCTCTCTTGAAATGTGTGGAGCCTCCTGGCTGGTTCCAGGTTGTCCCCGGGGCTGGGAGGCTCAGTCAGAAGCCGGCAGGTTACCCAGAGGCCCCACTGACTACACGTCTTCCCGGCAG
Seq C2 exon
ATCTCGTTCCTGGGGGGCCTGGCGCTCAACGAGGGGGTCAACTGGCTGATCAAACACGTCATCCAGGAGCCACGGCCCTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017922:ENSBTAT00000023834:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(0.8=2.9)
A:
NA
C2:
PF0156916=PAP2=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTCTCTGGCCACGTC
R:
GGCTCCTGGATGACGTGTTTG
Band lengths:
172-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development