DreINT0059484 @ danRer10
Intron Retention
Gene
ENSDARG00000036915 | dolpp1
Description
dolichyldiphosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-041024-11]
Coordinates
chr21:3737156-3739434:+
Coord C1 exon
chr21:3737156-3737256
Coord A exon
chr21:3737257-3739349
Coord C2 exon
chr21:3739350-3739434
Length
2093 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
GTCTTTGATCTTCTTCTCAGATC
3' ss Score
9.75
Exon sequences
Seq C1 exon
GCGATCTGACGGGGCAGGTATTGGCCTACATGAGCCTGCTGCCCATCGCGATCCTTGTCGGATTCGTCACTCTGATCGTCTTTAAGCGAGAACTACATACG
Seq A exon
GTAAGTCAATGACATCATAAACCAGTATGGTAGAGTGGAGGAACTATAACGTTGATTTGTATGCAAAACCCGGAGGCGAGTTAGCATTTTAGCAGTTCCGGTTCCCTCATCCCAAAGTCAATACGTTTTTTTTAATGGGATTTCAGTAAAATCACTTAAATAAGGTTTGTGGTTAACACAAACTCAAGATACTTTTTTAAAATTAAAAAAAAAATTTTTTTTATTGGTTTTAATGAACATACAAACGTAAACAAAAAAGGGCAAAGACAATTGTATCAGTAGACAAGTTTAGCAGCAAAAGGCAAAGAGAAAAAAAAATCAATAATTAAATAAATAAATAAAAAAAAAATAATAAAGAAGTAAACCTACAAACAAAAAACATAATACACAAAGTTATGCCGTGGTTAAGGTCACACATATTGTGAAAATACATCAGATGTCAGAGGATCATTAGAGGCATCCATATTTTTTGAAAGGCATCCCCTTTGTTTTTTAAGTAGTATGTATATTGTTCCAAGAGCATTGTTACATTCAAGAGTTTTATGAACAGTTCAAATGTTGGAGGTCTTTGTTGGTTCCAGTTGTGCAAAATGCATTTTTTTTTGCTAGATAGGAGATGATGCCGAGTCTCTTTATAGAAATAGGATCAAGTGTCTTGAAGTTCTGTACCAAAGAGGTATAGTGTTGGTGTGTTGTCCAATGGAACATGCAAAGCTTTCGCTGTAAAGTCCTGTACTGCTTTCCAGAAAAACTTTTAGCTTTTTGCATTCCCAAAAAACGTGCATGATTGATCCTGAATAGGTTTTACATCTGTGACACATGGATGATACATTAGGGTACATTTTGCTCAAACGAAGTGGGGTCAGATATGTCCTATGTATAAATTTATAATTTTGTTCAATTATTCTGTTATTGGAAAGGGGAATGAGAGTATTCTGGCATATAGCCTGCCACTGATCGTCATTAAAATTATATCCCAAATCTCTTTGCCACACGTTTTTAAGTGATCCCAGTGAAGAGTTGTAATATTCTAGTAGTGCAGAATATATCTCCGAGATTAACTCAAGATACGTTCATGTTTATTTACGTAATAAACGTAAAAATAACACAAAAATATTTTAAGGGAAAAGTGTCTTTTGGAGAAGTTTTACAATCTCATTGATACAGTTAAAAGATCTAATATGACTTTGAATATATGACTTTATATAATGAATATGACTTAAGTTTTTTTGTACGATGCATGATTAATAAAGTAAGATAGATATTTGAAGCTGATAATACATGCTACCCCTCGAAGTTAACTACTACTCTATTGAACAATGTAGAAAAAGGCGAAGCAGCTTCAAATGTCTATTAGAGAAAACTGCTGCCTTAATTTTTAGTTTGTTTATTTCATTAGTTTTATATTTAATTTCTTTATTAGAGTGGTACTTCATTCCGATTGACATTTGAAGCTGACAAAATGTGCTAATCCTGTTTTTTTAGATGAAATATGACAGATTGGGCGACCGGTTGCATATTCTGAGGAGGTAGTACAGATCGTCAGAATAACAAATGAAACTAACCATATTGATTTTGTTAGCTCATATTGCTAGTTTTGTGGTGATCTGTTCATCTGTGGATGTTATTTAAAAAAAAAAAGTTTGTCCTTTAATCTAAAATTGAAATTTGAAAATGCACTTCCTGTTTGTTTTCAGTTAAATTCTCAGATTAGGTCTGTCTGAGGTATTGGGCGGGGCTAACATACTTAATCACGCCCCCTCCTGCTGTCAGCTCTGACAACAAACAGAAATGATGATGAGGAGGAGGAGGCTGTAATAACTCTCCCCAAAGCCTTTCCCCATCTTTCTGAATGAAATGCCTATTTTACTACATCCAATCAGCTTGCAGTAAAAAAACACGCCCATAGTCTCATTTAATATTTAGTTTCTTTAGGAACTGTCTTAATATATGGAAAAAACAAACAGTCATAGATTCTGTTTCATGTGGCATTAAAACATGAATAATTCAAATAAGCTGTGCCGAATTGTCACACTCAGTGGAAATGAGCCAGATTACACTTTTCATCTTTTTGTCTTTGATCTTCTTCTCAG
Seq C2 exon
ATCTCATTTTTCGGGGGTCTGATCATGAACGAGGGCTTAAACTGGCTGCTCAAACACATCCTACAGGAGCCTCGGCCGTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036915:ENSDART00000053609:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(0.8=2.9)
A:
NA
C2:
PF0156916=PAP2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]