GgaEX1021101 @ galGal4
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86415654-86418995:+
Coord C1 exon
chr3:86415654-86415847
Coord A exon
chr3:86418097-86418259
Coord C2 exon
chr3:86418912-86418995
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTAAAACAAAATCAGGTT
3' ss Score
1.7
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
CAATGGAGATCTGAAGTAGATGAGAAAAGAGAAGTGTTCCATGCCTTAGAGGATGAGCTGCAGAAGGCAAAGATGATCAGCGATCAGATGTTTAAAACGCACAAGGAACGTGATCTTGACTTTGACTGGCATAAAGAAAAAGTTGATCAGTTAGCCGAGAGGTGGCAAAACATTCATTCTCAAATTGAAAATAG
Seq A exon
GTTACGTGACTTAGAAGGTATTAATAAATCTCTGAAGTACTACAAAGATACTTACGATTCATTGGACACTTGGATTCAACAAGTGGAAGATACTCAGAGGAAGATTCAAGAAATCCGTCCTGAAAATAGCAAAGCATTGGCTAAACAGCTGAACCAACATAAG
Seq C2 exon
ATGCTGGTTTCTGAGATTGAAATGAAACAAAGCAAAATAGACGAATGCCAGAAATATGCAGAACAGTACTCAGCTGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289-'41-42,'41-41,42-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.216 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043516=Spectrin=PU(52.9=83.6)
C2:
PF0043516=Spectrin=FE(31.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTGTTCCATGCCTTAGAGG
R:
GCAGCTGAGTACTGTTCTGCA
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]