RnoEX6039194 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38037291-38039942:-
Coord C1 exon
chr9:38039749-38039942
Coord A exon
chr9:38038035-38038197
Coord C2 exon
chr9:38037291-38037374
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTCCACTGCCGCTCTTGCAGGCT
3' ss Score
8.06
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
CAATGGCGATCAGAAGTAGATGAGAAGAGAGAGGTGTTCCACGCGTTGGAAGACGAGTTGCAGAAAGCGAAAGCCATCAGTGACGAGATGTTCAAGACACACAAAGAACGGGACCTTGACTTTGACTGGCACAAAGAAAAGGCAGACCAGCTCGTGGAAAGGTGGCAGAGTGTTCACGTCCAGATCGACAACAG
Seq A exon
GCTGCGGGACTTAGAAGGGATCGGGAAGTCCCTGAAGCACTACAGGGACTCCTACCACCCTCTAGATGACTGGATCCAGCAAATCGAAACGACCCAGAGAAAAATTCAGGAAAATCAGCCAGAAAACAGCAAAGCTCTGGCCGTACAGCTGAACCAACAGAAG
Seq C2 exon
ATGCTGGTATCTGAAATAGAGGTGAAGCAGAGCAAAATGGACGAGTGTCAGAAATACTCGGAGCAGTACTCAGCTGCCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207-'45-40,'45-39,47-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.327 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGAGAGGTGTTCCACGC
R:
CTTGACGGCAGCTGAGTACTG
Band lengths:
255-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]