DreEX6039254 @ danRer10
Exon Skipping
Gene
ENSDARG00000021987 | plecb
Description
plectin b [Source:ZFIN;Acc:ZDB-GENE-100917-2]
Coordinates
chr16:5575781-5578826:+
Coord C1 exon
chr16:5575781-5575919
Coord A exon
chr16:5578173-5578529
Coord C2 exon
chr16:5578743-5578826
Length
357 bp
Sequences
Splice sites
3' ss Seq
TGTTGGTGGTGTGTGTTCAGACG
3' ss Score
4.67
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCTGAAGACCATAGAGGTGGTGATCCGCAACACACAAGGGGCAGAAGATGTTGTGAAGAAATATGAGAATCGCCTGCGTGAGGTTCATACAGTTCCTACAAACGTGCAGGAGGTGGAGAACTACTGCTCAGAGCTCAAG
Seq A exon
ACGATGCGTGTGGACGCAGAGAAGCAGCGGCCGGTGTTTGACGATATGGAGGGTGAGCTGGCCAAGGCCTCAGCGGTCAGCCAGCGGATGGTCCAGATCCACATGGAGCGGGACGCTGAGCTGGAGCACTACAGACAGATGCTGGGCAGCCTGCAGGATCGCTGGCGGGCCGTCTTCGCCCAGATGGACCTGCGGCAGCGGGAGCTCGAGCAGCTCGGCCGGCAGCTGGGCTACTACAGGGAAAGCTACGACTGGCTCATCCGCTGGATCGCAGATGCTAAACAGCGGCAGGAGAAGATCCAGGCTGTGCCTATTATAGACAGCAAGACCCTCAAAGAACAGCTGGCACAGGAGAAG
Seq C2 exon
AAACTTCTGGAAGAAATTGAGAAAAACAAAGAGAAAGTTGACGAGTGTCAGAAATATGCCAAAAACTACATCGATACCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021987-'45-44,'45-43,46-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATAGAGGTGGTGATCCGCA
R:
TTAATGGTATCGATGTAGTTTTTGGC
Band lengths:
214-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]