RnoEX6032776 @ rn6
Exon Skipping
Gene
ENSRNOG00000023781 | Plec
Description
plectin [Source:RGD Symbol;Acc:621649]
Coordinates
chr7:117242684-117243422:-
Coord C1 exon
chr7:117243284-117243422
Coord A exon
chr7:117242840-117243196
Coord C2 exon
chr7:117242684-117242767
Length
357 bp
Sequences
Splice sites
3' ss Seq
TATCCTGCCTTGCCCAACAGAAG
3' ss Score
8.43
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
ACTCAAGACCATCAGCTTGGTAATTCGCAGTACCCAGGGGGCTGAGGAGGTGCTTAAAACACACGAGGAGCACCTGAAGGAGGCCCAGGCCGTGCCTGCCACACTCCAAGAGCTCGAAGTCACCAAGGCTTCACTAAAG
Seq A exon
AAGCTGCGGGCCCAGGCGGAGGCACAGCAGCCTGTATTCAACACCCTACGAGATGAGCTGAGGGGGGCACAGGAAGTTGGTGAACGGCTACAGCAGCGGCATGGTGAGCGGGACGTGGAAGTAGAGCGCTGGCGAGAACGTGTCACTCAGTTGCTGGAGCGCTGGCAGGCTGTGCTAGCCCAGACTGATGTGCGGCAGCGGGAGCTTGAACAGCTGGGCCGCCAACTTCGCTACTACCGTGAAAGTGCGGATCCGCTGAGCTCCTGGCTGCAGGATGCCAAGAGCCGGCAAGAGCAGATCCAGGCTGTGCCAATAGCCAACAGTCAGGCTGCACGAGAACAGCTGCGCCAGGAGAAG
Seq C2 exon
GCCCTGCTGGAGGAGATTGAGCGCCATGGTGAGAAGGTTGAGGAGTGCCAGAAGTTTGCTAAGCAGTACATCAATGCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023781-'40-53,'40-51,41-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.126 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAAGACCATCAGCTTGG
R:
CTTGATTGCATTGATGTACTGCT
Band lengths:
223-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]