DreEX0056151 @ danRer10
Exon Skipping
Gene
ENSDARG00000062590 | pleca
Description
plectin a [Source:ZFIN;Acc:ZDB-GENE-030131-8984]
Coordinates
chr19:22839902-22843222:-
Coord C1 exon
chr19:22843084-22843222
Coord A exon
chr19:22842604-22842960
Coord C2 exon
chr19:22839902-22839985
Length
357 bp
Sequences
Splice sites
3' ss Seq
TCCTTTATTCTCAACCCTAGAAG
3' ss Score
8.28
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GCTGAAGACCATTGACTTGGTAATCCGCAGCACACAAGGAGCTGAAGACATTCTCAACAAGTATGAGAACCAATTGCGTGAAGTGAACAAAGTTCCTGTTAACGAGAAAGAGATTGAGGCCAGTCAAACACAGCTCCAG
Seq A exon
AAGCTGCGCTCAGAAGCAGAAGGCAAGCAAGCCACATTTGACCGTCTGGAAGAGGAGCTTCAGAGAGCAACAGAAGTGAACAAGCGGATGTCTCAGCTGCACAGCGAGCGGGATGTGGAGCTGGAGCACTACAGGCAGCTGGTGGGCAACCTGAGGGAGCGCTGGCAAGCTGTGTTTGCTCAGATTGAGCTGAGGCAGCGAGAGCTTGATCTTCTGAACAGACAGATGCAAGCCTACAGAGAGAGCTACGACTGGCTCATACGCTGGATCGCAGATGCCAAACAAAGGCAGGACAAGCTCCACGCTGTGCCCATCGGTGGCAGCAAAGGCCTTCAGGAACAGCTTACACAGGAAAAG
Seq C2 exon
AAACTTCTCGAGGAGATTGAGAAAAACAAGGACAAGGTAGAGGACTGCCAGAAATTTGCTAAAGGATACATCGATGCCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062590_MULTIEX1-9/14=8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.126 C2=0.000
Domain overlap (PFAM):
C1:
PF053358=DUF745=PU(30.6=78.7)
A:
PF053358=DUF745=PD(67.8=68.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGACTTGGTAATCCGCAGC
R:
CTTTATGGCATCGATGTATCCTTT
Band lengths:
214-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]