HsaEX6082844 @ hg38
Exon Skipping
Gene
ENSG00000178209 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:HGNC:9069]
Coordinates
chr8:143927252-143927992:-
Coord C1 exon
chr8:143927854-143927992
Coord A exon
chr8:143927410-143927766
Coord C2 exon
chr8:143927252-143927335
Length
357 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCCTGTCCCCAACAGAAG
3' ss Score
9.04
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GCTCAAGACCATCAGCCTGGTGATCCGCGGCACGCAGGGGGCCGAGGAGGTGCTCAGGGCCCACGAGGAGCAGCTCAAGGAGGCCCAGGCCGTGCCGGCCACCCTCCCGGAGCTCGAGGCCACCAAGGCCTCTCTGAAG
Seq A exon
AAGCTGCGGGCCCAGGCCGAGGCACAGCAGCCCACGTTCGACGCCCTGCGGGATGAGCTGCGGGGGGCACAGGAGGTGGGGGAGCGACTGCAGCAGCGGCACGGGGAGCGGGACGTGGAGGTGGAGCGCTGGCGGGAGCGGGTCGCCCAGTTGCTTGAGCGCTGGCAGGCTGTGCTGGCCCAGACCGACGTGCGGCAGCGCGAGCTCGAGCAACTGGGCCGCCAGCTGCGTTACTACCGCGAGAGTGCAGACCCCTTGGGCGCCTGGCTGCAGGACGCCAGGCGGCGGCAGGAGCAGATCCAGGCCATGCCGCTGGCCGACAGCCAGGCTGTGCGGGAGCAGCTGCGGCAGGAGCAG
Seq C2 exon
GCCCTGCTGGAGGAGATCGAGCGCCACGGCGAGAAGGTCGAGGAGTGCCAGAGGTTTGCGAAACAGTACATCAACGCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178209-'73-82,'73-80,76-82
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.210 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(33.3=76.6)
A:
PF0043516=Spectrin=PD(64.8=58.8),PF0043516=Spectrin=PU(51.1=37.8)
C2:
PF0043516=Spectrin=FE(30.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGACCATCAGCCTGG
R:
CTTGATGGCGTTGATGTACTGT
Band lengths:
223-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains