BtaEX6061401 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011922 | PLEC
Description
plectin [Source:HGNC Symbol;Acc:HGNC:9069]
Coordinates
chr14:2076546-2077300:+
Coord C1 exon
chr14:2076546-2076684
Coord A exon
chr14:2076785-2077141
Coord C2 exon
chr14:2077217-2077300
Length
357 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCTCTGGTCCAACAGAAG
3' ss Score
7.7
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTCAAGACTATCAGCCTGGTGATCCGGAGCACGCAGGGGGCTGAGGAGGCACTCAAGGCCCACGAGGAGCAGCTCAAGGAGGCCCAGGCTGTGCCCGCTGCCCTCCCAGAGCTTGAGGCCACCAAGGCTGCAATGAAG
Seq A exon
AAGCTGCGGGCCCAGGCGGAGGCACAGCAGCCTGTGTTCGATGCCCTGCGGGATGAGCTGCGGGGGGCACAGGAGGTGGGCGAGCGGCTGCAGCAGCGGCACGGCGAGCGGGACGTGGAGGTGGAGCGCTGGCGTGAGCGGGTCACCCAACTGCTGGAGCGCTGGCAGGCCGTGCTGGCCCAGACCGACGTGCGGCAGCGTGAGCTTGAGCAGCTGGGCCGCCAGCTGCGCTACTACCGGGAGAGCGCAGACCCGCTGGGCGCCTGGCTGCAGGACGCCAGGCGGCGGCAGGAGCAGATCCAGGCCGTGCCGCTGGCCGACAGCCAGGCTGTGCGCGAGCAGCTGCGGCAGGAGAAG
Seq C2 exon
GCCCTGCTGGAAGAGATTGAACGCCATGCTGAAAAGGTAGAGGAGTGCCAGAGGTTCGCGAAGCAGTACATCAACGCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011922-'39-36,'39-34,40-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.084 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(34.5=80.9)
A:
PF0043516=Spectrin=PD(63.6=58.8),PF0043516=Spectrin=PU(34.9=37.8)
C2:
PF0043516=Spectrin=FE(20.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGACTATCAGCCTGGTG
R:
TTGATGGCGTTGATGTACTGCT
Band lengths:
222-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]