GgaEX6025274 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5335872-5336727:+
Coord C1 exon
chr23:5335872-5336059
Coord A exon
chr23:5336218-5336380
Coord C2 exon
chr23:5336644-5336727
Length
163 bp
Sequences
Splice sites
3' ss Seq
GGTCTCCTTTCTGCTTTCAGCCA
3' ss Score
8.11
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
CAATGGCTCGGGGAAGTGAAGGGCAAGAACTCGGTGTTCTCCATGTTGGAGGAGGAGATGGCGAAGGCAGTGGGAGAGCAGCTGTACCAGCTGAGACAGGAGCGCAGCATCGACCTCGAGCGCTACCAGGAGAAGGGGAGCCAGCTGTGGGACCGCTGGCAGAGAGCCTGCACGCAGATTGAGACCCG
Seq A exon
CCACACGGAGCTGGAGAGCATCCAGGAGGTGCTGAGCGATTACCGCCAGTGCCACAGGGCCCTCATCCAGTGGATCGAGGAGATCACCGCCCAGCAGGAGCTGATGAAACCCGGGCAGGCGGAGGACAGCCGGGTGCTGTCAGAGCAGCTGAGCCAGCAAACG
Seq C2 exon
GCTTTGGCTGCAGAAATCGAGAAGAATCAAGCCAAGCTGGACCAGTGTCAGAAGTTCTCCCAGCAGTACTCAGCTGCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'40-42,'40-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.141 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGCTCGGGGAAGTGAAG
R:
ACTTCTGACACTGGTCCAGCT
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]