Special

MmuEX0027456 @ mm9

Exon Skipping

Gene
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123165572-123168024:-
Coord C1 exon
chr4:123167831-123168024
Coord A exon
chr4:123166453-123166615
Coord C2 exon
chr4:123165572-123165655
Length
163 bp
Sequences
Splice sites
3' ss Seq
GCTTGCATTTGTTCCTCCAGGCA
3' ss Score
9.45
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CACTGGCTTAGTGATGTGAAGGACAAGAATTCAGTGTTCTCAGTCCTGGATGAGGAAATCACTAAGGCCAAGAAAGTGGCAGAACAGCTCCGGCACCCAGCATCAGAGCCAAACTTGGATTTGGAGCGCTATCAGGAGAAAGGTTCTCAGCTACAGGAGCGGTGGCACCGTGTCATTGCCCAGCTGGAGACCCG
Seq A exon
GCAATCTGAGGTAGAAAGTATCCAGGAAGTTCTGAGAGATTACCGAGCCTGCCATGGAACTCTCATCAAGTGGATTGAGGAAACCACTGCCCAGCAGGAAATGATGAAGCCTGGCCAGGCAGAGGATAGTAGAGTGCTGTCAGAGCAGCTTAGTCAGCAGACG
Seq C2 exon
GAACTCTTTGCTGAAATTGAGAGAAATCAGACAAAGTTGGACCAATGTCAAAAATTTTCCCAGCAGTACTCCACTATTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-'39-38,'39-37,40-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.277 A=0.273 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
([1])
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTCAGTCCTGGATGAGG
R:
CACAATAGTGGAGTACTGCTGGG
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types