GgaEX6025274 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5651048-5651903:+
Coord C1 exon
chr23:5651048-5651235
Coord A exon
chr23:5651394-5651556
Coord C2 exon
chr23:5651820-5651903
Length
163 bp
Sequences
Splice sites
3' ss Seq
GGTCTCCTTTCTGCTTTCAGCCA
3' ss Score
8.11
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
CAATGGCTCGGGGAAGTGAAGGGCAAGAACTCGGTGTTCTCCATGTTGGAGGAGGAGATGGCGAAGGCAGTGGGAGAGCAGCTGTACCAGCTGAGACAGGAGCGCAGCATCGACCTCGAGCGCTACCAGGAGAAGGGGAGCCAGCTGTGGGACCGCTGGCAGAGAGCCTGCACGCAGATTGAGACCCG
Seq A exon
CCACACGGAGCTGGAGAGCATCCAGGAGGTGCTGAGCGATTACCGCCAGTGCCACAGGGCCCTCATCCAGTGGATCGAGGAGATCACCGCCCAGCAGGAGCTGATGAAACCCGGGCAGGCGGAGGACAGCCGGGTGCTGTCAGAGCAGCTGAGCCAGCAAACG
Seq C2 exon
GCTTTGGCTGCAGAAATCGAGAAGAATCAAGCCAAGCTGGACCAGTGTCAGAAGTTCTCCCAGCAGTACTCAGCTGCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'34-32,'34-31,35-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGGCTCGGGGAAGTGAAG
R:
ACTTCTGACACTGGTCCAGCT
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]