GgaEX1022650 @ galGal4
Exon Skipping
Gene
ENSGALG00000007169 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr2:14085775-14097080:+
Coord C1 exon
chr2:14085775-14086127
Coord A exon
chr2:14088868-14089324
Coord C2 exon
chr2:14096962-14097080
Length
457 bp
Sequences
Splice sites
3' ss Seq
CCGTTCTTCTCTGGCTACAGGAG
3' ss Score
8.06
5' ss Seq
AAAGTAGGC
5' ss Score
5
Exon sequences
Seq C1 exon
GGTGCTACTAGACAGAGCACATTCGGACTACGATAATACATTTCATCAGCTGGATTTGGAAATGCTTTCCTCATCACAACACTCTTCAATCAGTCAATTTGCCAATACCTCAGAAACAAATACCTCGGACAAATCTTTCTCGAAAGACCTCAGTCAGATACTAGTCAATATCAAATCATGTAGATGGCGGCACTTTAGGCCTCGGACACCATCCCTACATGACAGTGACAATGACGAACTCTCCTGTAGGAAACTGTACAGGGGTGTAAATCGAACAGGCACAGCACAACCTGGGACCCAGACATGCAGTACCTCTATACAAAGTAAAAGTAGCAGTGGTTCAGCACATTTTG
Seq A exon
GAGGCTTTGGTTTTTGTCCTGAAGACCTGGAGAGAGGTTTCCTCCAAGAGGCGGGAGGTGATTGGATTCATGATGATTTTTGCACCTGAAGAAGCAGGAGCTGTTCTGATACTGGCTGTCAAACTGCTCAGCATTAAAAAGAAAAAAAAAAACAAAACAAAACCAAAACTGTATGGAAGATGGAGTTGTTACCACGAGATGCTCTATGTCAACTGAGGAAGGGATGTCTTAAATCTCTTAGAAGTTCCGTGGAAGCATGGCTTGTACTACGCTTGCCTTATGTGGAAGGTTAGACTTCAGCAGCAAGATGGAGTAGCCAAGAAAAGTAGCATCACCTTTGAAGAGGGGTGGTCCCTTTTCATCTTGCTGAAGAACTAGAAAAGATGCTTTGTTACCTTGTAACAAGAAAAGCTGATTTGAGGATTTTCAGGCATATTACCCAGAGCACCAGTAAAAA
Seq C2 exon
CATTTACAGCCGAACAATACCAGCAACATCAACAACAACTGGCACTAATGCAGAAACAGCAGCTTGCACAAATTCATCAACAGCAAGCAAATAGTAATTCCTCTGCCAACACATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169_MULTIEX1-3/7=2-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(0.1=0.0)
A:
NO
C2:
PF067527=E_Pc_C=PU(14.9=97.5)
Main Inclusion Isoform:
ENSGALT00000011610fB7193
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTCCTCATCACAACACTCT
R:
GCAAGCTGCTGTTTCTGCATT
Band lengths:
358-815
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]