GgaEX0010254 @ galGal4
Exon Skipping
Gene
ENSGALG00000007169 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr2:14085775-14098036:+
Coord C1 exon
chr2:14085775-14086127
Coord A exon
chr2:14097130-14097248
Coord C2 exon
chr2:14097895-14098036
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCCTCATTGTTTCCCACCAGGGT
3' ss Score
10.71
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTGCTACTAGACAGAGCACATTCGGACTACGATAATACATTTCATCAGCTGGATTTGGAAATGCTTTCCTCATCACAACACTCTTCAATCAGTCAATTTGCCAATACCTCAGAAACAAATACCTCGGACAAATCTTTCTCGAAAGACCTCAGTCAGATACTAGTCAATATCAAATCATGTAGATGGCGGCACTTTAGGCCTCGGACACCATCCCTACATGACAGTGACAATGACGAACTCTCCTGTAGGAAACTGTACAGGGGTGTAAATCGAACAGGCACAGCACAACCTGGGACCCAGACATGCAGTACCTCTATACAAAGTAAAAGTAGCAGTGGTTCAGCACATTTTG
Seq A exon
GGTTCATCTCTAATTGTCAACTGTTGCCATAGAACCTTGAAACTAACCAACAGGAAAGTGGCTTTCGCCTGAATCTACATCATAGCCATTCTGTAAAGTGTTTAGAAGGGACACTGCAG
Seq C2 exon
GGTTTTGTTTCCAAGACACTGGATTCTGTTAGTGCTCAATTCGCTGCTTCAGCTTTGGTTACATCAGAACAATTGATGGGATTCAAAATGAAGGATGATGTGGTGCTTGGAATTGGGGTGAATGGCATTCTTCAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169_MULTIEX1-6/7=2-7
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.331 A=0.448 C2=0.000
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(0.1=0.0)
A:
PF067527=E_Pc_C=FE(10.7=100)
C2:
PF067527=E_Pc_C=FE(17.9=100)
Main Skipping Isoform:
ENSGALT00000011610fB7193
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAATGACGAACTCTCCTGT
R:
TTCACCCCAATTCCAAGCACC
Band lengths:
251-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]