BtaEX0013029 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33514805-33516219:+
Coord C1 exon
chr13:33514805-33514923
Coord A exon
chr13:33515004-33515090
Coord C2 exon
chr13:33516078-33516219
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATTACCAACTGTTGTCATAGAAC
3' ss Score
4.94
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CATTTACAGCCGAACAATACCAGCAACATCAACAGCAGCTGGCACTCATGCAGAAACAGCAGCTTGCACAAATTCAGCAACAGCAAGCAACTAGTAATTCCTCCACCACCGTGCCACAG
Seq A exon
AACCTTGCATCTAACCAGCAGAAAAGTGGCTTTCGCCTGAATCCACATCATAGCCACTCTATACAGGGTTTAGAAAGAACATTACAG
Seq C2 exon
GGTTTTGTGTCCAAGACTTTGGATTCTGCTAGTGCTCAATTTGCTGCTTCTGCTTTGGTGACATCGGAACAACTGATGGGATTCAAGATGAAGGAGGATGTGGTGCTTGGAATTGGGGTGAACGGCGTCCTTCCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.862 C2=0.000
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(14.9=97.5)
A:
PF067527=E_Pc_C=FE(10.7=100)
C2:
PF067527=E_Pc_C=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTTGCACAAATTCAGCA
R:
CCAAGCACCACATCCTCCTTC
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development