RnoEX0032467 @ rn6
Exon Skipping
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57308179-57316917:-
Coord C1 exon
chr17:57316565-57316917
Coord A exon
chr17:57309650-57309750
Coord C2 exon
chr17:57308179-57308320
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCCTCATTGTTTCCCACCAGAGT
3' ss Score
9.45
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTCTTGCTGGACAGAGCGCATTCAGACTATGACAGTATGTTTCACCACCTGGATCTGGACATGCTTTCCTCACCACAACCTTCTCCAGTCAATCAGTTTGCCAATACCTCAGAAACCAATACCTCGGACAGACCTTCCTCTAAAGACCTCAGTCAGATACTAGTCGATATCAAATCATGTAGATGGCGGCACTTTAGGCCCCGGACACCATCCCTTCCTGACAGTGACAGTGGTGAGCTCTCCAGTAGAAAGTTACACAGAAGTATAAGTCGAGCAGGACCAGCGCAGCCTGGGGCCCACACGTGCAGCGCCTCCACACAGAGCAGAAGTAGCAGTGGCTCGACACACTGTG
Seq A exon
AGTTCATCTCTCATTACCAAGGGTTGTCATAGAACCTTGCATCTAACCAGCAGACACGTGGCTCTGGCCTGAATGTACAGGGTTTAGAAAGAACACTCCAG
Seq C2 exon
GGTTTTGTTTCTAAGACGTTGGATTCTGCCAGTGCACAGTTCGCTGCTTCTGCTTTAATGACGTCAGAACAGCTGATGGGATTCAAGATGAAGGATGATGTGGTGCTTGGGATTGGGGTGAATGGCGTCCTTCCCGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834_MULTIEX1-4/4=1-C2
Average complexity
ME(3-4[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(0.1=0.0)
A:
NA
C2:
PF067527=E_Pc_C=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGACAGTGGTGAGCTCT
R:
ATTCACCCCAATCCCAAGCAC
Band lengths:
255-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]