GgaEX0010254 @ galGal3
Exon Skipping
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14070174-14082435:+
Coord C1 exon
chr2:14070174-14070526
Coord A exon
chr2:14081529-14081647
Coord C2 exon
chr2:14082294-14082435
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCCTCATTGTTTCCCACCAGGGT
3' ss Score
10.71
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTGCTACTAGACAGAGCACATTCGGACTACGATAATACATTTCATCAGCTGGATTTGGAAATGCTTTCCTCATCACAACACTCTTCAATCAGTCAATTTGCCAATACCTCAGAAACAAATACCTCGGACAAATCTTTCTCGAAAGACCTCAGTCAGATACTAGTCAATATCAAATCATGTAGATGGCGGCACTTTAGGCCTCGGACACCATCCCTACATGACAGTGACAATGACGAACTCTCCTGTAGGAAACTGTACAGGGGTGTAAATCGAACAGGCACAGCACAACCTGGGACCCAGACATGCAGTACCTCTATACAAAGTAAAAGTAGCAGTGGTTCAGCACATTTTG
Seq A exon
GGTTCATCTCTAATTGTCAACTGTTGCCATAGAACCTTGAAACTAACCAACAGGAAAGTGGCTTTCGCCTGAATCTACATCATAGCCATTCTGTAAAGTGTTTAGAAGGGACACTGCAG
Seq C2 exon
GGTTTTGTTTCCAAGACACTGGATTCTGTTAGTGCTCAATTCGCTGCTTCAGCTTTGGTTACATCAGAACAATTGATGGGATTCAAAATGAAGGATGATGTGGTGCTTGGAATTGGGGTGAATGGCATTCTTCAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169_MULTIEX1-2/3=C1-3
Average complexity
ME(1-2[100=98])
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(0.1=0.0)
A:
PF067527=E_Pc_C=PD(30.5=75.0)
C2:
PF067527=E_Pc_C=FE(20.2=100),PF073636=DUF1484=PD(55.0=91.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAATGACGAACTCTCCTGT
R:
TTCACCCCAATTCCAAGCACC
Band lengths:
251-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]