MmuEX1009529 @ mm10
Exon Skipping
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6440049-6441243:-
Coord C1 exon
chr18:6441122-6441243
Coord A exon
chr18:6440976-6441044
Coord C2 exon
chr18:6440049-6440190
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATTACCAAGTGTTGTCCTAGAAC
3' ss Score
1.27
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CATTCACAGCCGAACAGTACCAGCAGCACCAGCAGCAGCTGGCACTCATGCAGCAGCAGCAGCTTGCGCAGACTCAGCAGCAGCAGCAAGCAAATAGTAGTTCCTCTGCCGCCGCGCAACAG
Seq A exon
AACCTTGCATCTAACCAGCAGAAAAGTGGCTCTGGCCTGAATGTACAGGGTTTAGAAAGAACATTCCAG
Seq C2 exon
GGTTTTGTTTCTAAGACGTTGGACTCTGCTAGTGCACAGTTTGCTGCTTCTGCTTTGATGACGTCGGAACAGCTGCTGGGGTTCAAGGTGAAGGATGATGTGGTGCTCGGGCTCGGGGTGAATGGCGTCCTTCCTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240-'26-27,'26-26,27-27
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=0.652 C2=0.010
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(17.2=97.6)
A:
PF067527=E_Pc_C=FE(8.6=100)
C2:
PF067527=E_Pc_C=FE(20.2=100)
Main Inclusion Isoform:
ENSMUST00000028100fB9472
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGTACCAGCAGCACCAG
R:
TGTTCCGACGTCATCAAAGCA
Band lengths:
182-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types