GgaINT0101662 @ galGal3
Intron Retention
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14081361-14082435:+
Coord C1 exon
chr2:14081361-14081479
Coord A exon
chr2:14081480-14082293
Coord C2 exon
chr2:14082294-14082435
Length
814 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCCACCATTGTTCTTTTCAGGGT
3' ss Score
8.93
Exon sequences
Seq C1 exon
CATTTACAGCCGAACAATACCAGCAACATCAACAACAACTGGCACTAATGCAGAAACAGCAGCTTGCACAAATTCATCAACAGCAAGCAAATAGTAATTCCTCTGCCAACACATCACAG
Seq A exon
GTGAGGGATTTGTCTGTGCTATGATTTATCCCTCATTGTTTCCCACCAGGGTTCATCTCTAATTGTCAACTGTTGCCATAGAACCTTGAAACTAACCAACAGGAAAGTGGCTTTCGCCTGAATCTACATCATAGCCATTCTGTAAAGTGTTTAGAAGGGACACTGCAGGTGAGTGTGGCAGGCATTGCCTCTGCTCCCTCTTAACAACAAAAAAAAAGATGGGTCAGTCGATTAAGTAAATATTCAGAGCCTTAGGAATATGAATTGCAGAGATCTCCGGCCGTGTCGTTACCCTTTTGGCACTGGGAGACTTCAGAGCAGGGTATTTTCTTAGTTAACAACTAAAGCTAGCTTCTGAATACGTCCTCTGTACAGATGTGGAAGTGTCTAACGTTCAGAAGTGTGTGGTGTTTGCACTGAGGATGGACACGTCTTTAAAAACGTTCAGAAGTTACTGGCAATCTGAACATCTGAGGCACTGAACTGGGTTTGGAATTCCGTGAGAACAGTTTGACCTGTGAAACAACGTTGTTCCATAGGATTTGGAAAATAAGTTTCTTTGTGTTTTAAATAGGTGTGGGGACTTCCATCGCTGTTACTGTCATGGAGCTAAAATTGCATAGAGAAATCACAGTTCAGCTCTTACCTAGCTGTACCGAATGTCAACAGTTTAGTCTTGCGAGAATGACTGGGCTGGTTCTGGTTTACGTGGATGGATTTTTGTTTCACTAGTTTGTGTGTAGCTTTAAAATGAGGAGAGTACTGACTCCTGGAAGCCTCAATCACATGTGTGTGCCACCATTGTTCTTTTCAG
Seq C2 exon
GGTTTTGTTTCCAAGACACTGGATTCTGTTAGTGCTCAATTCGCTGCTTCAGCTTTGGTTACATCAGAACAATTGATGGGATTCAAAATGAAGGATGATGTGGTGCTTGGAATTGGGGTGAATGGCATTCTTCAAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169:ENSGALT00000011610:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.425 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(16.7=97.5),PF073636=DUF1484=PU(42.5=85.0)
A:
NA
C2:
PF067527=E_Pc_C=FE(20.2=100),PF073636=DUF1484=PD(55.0=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCGAACAATACCAGCAA
R:
TGAGGCTTGAAGAATGCCATTCA
Band lengths:
255-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]