RnoINT0055450 @ rn6
Intron Retention
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57308179-57309917:-
Coord C1 exon
chr17:57309799-57309917
Coord A exon
chr17:57308321-57309798
Coord C2 exon
chr17:57308179-57308320
Length
1478 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTTTTGTGTTTTCCTTTCAGGGT
3' ss Score
13.07
Exon sequences
Seq C1 exon
CATTTACAGCCGAGCAGTACCAGCAGCACCAGCAGCAACTGGCACTCATGCAGCAGCAGCAGCTTGCACAAACTCAGCAGCAGCAAGCAAATAGCAGTTCCTCCACCGCCGCTCCACAG
Seq A exon
GTGAGGGGCTTGTGTGTCTTATGATTATCCCTCATTGTTTCCCACCAGAGTTCATCTCTCATTACCAAGGGTTGTCATAGAACCTTGCATCTAACCAGCAGACACGTGGCTCTGGCCTGAATGTACAGGGTTTAGAAAGAACACTCCAGGTGAGTATGGAAGCCGTTCCCTCTGCTGCTGTTATACAGAGTAACTTAAGAACGTAGCTCTCTAAGTTGTAAAGTAGCTTCATTCTGACGGGTCTGTAATGTACTGTCCTCATCGCAAAGCCCCATGCAGCTGATGTTCCAGTTCCAGAGTTAACCCAAAACCATCTGTTCTGCTCTTAAGTATGGAAAGATACTTGCTGTATAGATAGACTTGGGGCTGAACGGCTGAGAATTGAGTCCTTCCAAGCATTTAAAGGAAATTTCATTTTTGAAGATGCGAGAGGCCTTTTCATTTTTAAATTATGATGTCAGATCTTTTTTTAATTAAGGGATGGTTGTCTTACTATTGAAAGGTGCTTCTGGGTGGACAGTGGGTGGATATTAGCACTGAGGGTGGGTAGGAAGAATGGTGTTTGGAGATTAAATGAAAGAAGTTACGTATTTGCCTTAATGGATTTGTCCAGGACTGAACTACCTGAGAAAATTGAAACTTTCTGCTGCTGTTGTATTCTGCACTAATAGGCTTATTTTTGTAATTGCTTTGTATATATTCTGTATTATCATAGGAAGATCAAAATGTGTAAACCTTTAAGTTAGACAATTAACTATAGCTATGAAAATGAAGTAGATTTCATTGGTTTGCTGCTTTTAGAGCTGTGAAGCTGATTCTGGTGACCTGTGTAGTGACACTGACTGACTCTGGTGACCTGTGTAGTAACACTGACTGACTCTGGTGACCTGTGTAGTGATGCTGACCGACTCTGGTGACCTGTATAGTGACGCTGACCGACTCTGGTGACCTGTGTAGTGACGCTGACTGACTCTGGTGACCTGTGTAGTGACATTGACTGACTCTGGTGACCTGTGTAGTGACGCTGACTGACTCTGGTGACCTGTGTAGTGATGCTGACTGACTCTGGTGACCTGTGTAGTGACGCTGACTGACTCTGGTGACCTGTGTAGTGACATTGACTGACTCTGGTGACCTGTGTAGTGACGCTGACTGACTCTGGTGACCTGTGTGTAGTGACGCTGACTGACTCTGGTGACCTGTGTAGTGAGGCTGACTGACTAGTGACTCTGTGCAGTGATGCTGACCGACTCTGGTGACCTGTGTACTGATGCTGACTGACTCTGGTGACCTGTGTAGTGACGCTGACTGACTCTGGTGACCTGTGTGTAGTGACGCTGACTGACTCTGGTGACCTGTGTAGTGACGCTGACTGACTCTGGTGACCTGTGTAGTGAGGCCGACCGACTTTGATCACCTGTGGTACTGACTGATACTTCAAGACAATTACACTGATGACTTTTGTGTTTTCCTTTCAG
Seq C2 exon
GGTTTTGTTTCTAAGACGTTGGATTCTGCCAGTGCACAGTTCGCTGCTTCTGCTTTAATGACGTCAGAACAGCTGATGGGATTCAAGATGAAGGATGATGTGGTGCTTGGGATTGGGGTGAATGGCGTCCTTCCCGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834:ENSRNOT00000019968:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(16.8=97.5)
A:
NA
C2:
PF067527=E_Pc_C=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTACAGCCGAGCAGTACCA
R:
CGGGAAGGACGCCATTCAC
Band lengths:
255-1733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]